Lead-author publications
Microbiome metabolic modelling reveals candidate functional signatures of PFAS elimination in a high-exposure human cohort
In review
Integrated metagenomics, PFAS measurements, and genome-scale metabolic modelling in a highly exposed human cohort to identify candidate microbiome functions linked to PFAS elimination. The work highlights microbiome functional capacity, rather than a strong taxonomic signature, as a promising direction for understanding inter-individual PFAS toxicokinetics.
Metatranscriptomics-based metabolic modeling of patient-specific urinary microbiome during infection
Combined metatranscriptomics with patient-specific metabolic modelling to characterize the active urinary microbiome during infection. The study shows how functional heterogeneity across patients can shape infection biology and supports more personalized, microbiome-aware approaches to urinary tract disease.
Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning
Used transcriptomics and machine learning to reconstruct the regulatory network of probiotic L. reuteri. The work clarifies how this beneficial microbe adapts across conditions and provides a systems-level foundation for probiotic and sustainable microbial applications.